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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7816473_7826514_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7816473 - 7826514
Intron Length:
10042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
REDEKRENERETMFQLPVNN
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
79.8
0.67
0.8
77.7
29.7
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
ADNP
Ensembl Gene ID:
ENSAPLG00000007870
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008163
7809771 - 7827382
17612
ENSAPLT00000036106
7809753 - 7827919
18167
ENSAPLT00000028091
7809500 - 7839782
30283
ENSAPLT00000025502
7809753 - 7834592
24840
ENSAPLT00000017486
7809500 - 7836458
26959
ENSAPLT00000038226
7809500 - 7836894
27395