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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7826822_7827282_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7826822 - 7827282
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGAACC
5'SS Class:
major
3'SS Sequence:
AATATTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATTCCATGGAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
0.9
71.4
32
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
74.3
0.55
1
66.5
43.1
Minor 5ss
31
-2.2
2.9
36.7
33.4
Minor BPS
47.8
-0
1.9
70.78
39.1

Associated Gene:

Gene:
ADNP
Ensembl Gene ID:
ENSAPLG00000007870
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008163
7809771 - 7827382
17612