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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7828053_7829383_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7828053 - 7829383
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GTTTTTAGAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
70
0.5
1
67
39.8
Major PPT
81.6
0.71
0.8
77.3
31.5
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
49.9
-0
1.7
65.42
34.8

Associated Gene:

Gene:
ADNP
Ensembl Gene ID:
ENSAPLG00000007870
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028091
7809500 - 7839782
30283
ENSAPLT00000017486
7809500 - 7836458
26959