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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7854667_7854957_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7854667 - 7854957
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TAATCATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTCTCTGTAATC
Flanking Amino Acid:
PGASDLTGSFRLYRKEVLQK
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
36.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
76.8
0.6
0.9
69.7
40.1
Minor 5ss
29.4
-2.4
3.6
41.9
45.1
Minor BPS
60.8
0.32
2
73.34
38.7

Associated Gene:

Gene:
DPM1
Ensembl Gene ID:
ENSAPLG00000007501
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007786
7852207 - 7862514
10308