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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7855027_7856744_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7855027 - 7856744
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTAATTTTGACA
Flanking Amino Acid:
HGWDLKRKLISRGANFITQV
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
58.3
0.25
1.3
63.9
36

Associated Gene:

Gene:
DPM1
Ensembl Gene ID:
ENSAPLG00000007501
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007786
7852207 - 7862514
10308