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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7857818_7857916_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7857818 - 7857916
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
VIMDADLSHHPKFIPEFIRK
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
DPM1
Ensembl Gene ID:
ENSAPLG00000007501
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007786
7852207 - 7862514
10308