About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7860155_7861697_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7860155 - 7861697

Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATT|GTGAGTTGC

5'SS Class:
major

3'SS Sequence:
ATATATCCTACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TGTATTTTAATA

Flanking Amino Acid:
LEKIYGSDKILLRPREKKLG

Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.9
0.49
1.1
64
36.9

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
74.2
0.54
0.9
66.5
39.7

Minor 5ss
37.7
-1.4
2.9
49.5
41.3

Minor BPS
67.6
0.55
1.2
72.13
33.9

Associated Gene:

Gene:
DPM1

Ensembl Gene ID:

Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7852207 - 7862514
10308