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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7861798_7861963_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7861798 - 7861963
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
GGTCTCGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAAAAT
U12 Branch Point Sequence:
CTGCCCTAAAAT
Flanking Amino Acid:
VWLLVRTFQDSGIDFEIIII
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
58.2
0.21
1.2
65.3
36.8
Major PPT
73.7
0.53
1
69.3
41.7
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
54
0.2
1.9
70.51
46

Associated Gene:

Gene:
DPM1
Ensembl Gene ID:
ENSAPLG00000007501
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007786
7852207 - 7862514
10308