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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7881045_7881541_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7881045 - 7881541
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CGATTACAAACT
Flanking Amino Acid:
MPDLREEEEKGECSQMCYNI
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.7
0.85
0.7
80.3
31.8
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
42.3
-0.5
2.1
59.08
43.7

Associated Gene:

Gene:
KCNG1
Ensembl Gene ID:
ENSAPLG00000007454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007732
7880274 - 7887185
6912