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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7882344_7887112_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7882344 - 7887112
Intron Length:
4769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ACTCACTAAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
88.6
0.87
0.8
81
36.6
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
51.3
0.02
1.9
63.29
41.9

Associated Gene:

Gene:
KCNG1
Ensembl Gene ID:
ENSAPLG00000007454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007732
7880274 - 7887185
6912