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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8020911_8021215_R

Intron Information:

Intron Rank:
149745
Intron Class:
major
Intron Phase:
Intron Coordinates:
8020911 - 8021215
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
CCTTTATCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
62.1
39
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.8
0.76
0.8
81.2
29.6
Minor 5ss
42.3
-0.8
3
59.8
44.6
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028099
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019663
8020843 - 8021868
1026