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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8021297_8021390_R

Intron Information:

Intron Rank:
149746
Intron Class:
major
Intron Phase:
Intron Coordinates:
8021297 - 8021390
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTTCTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
72.8
34.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77
0.61
0.8
69.8
35.6
Minor 5ss
40.2
-1.1
2.7
49.4
46.8
Minor BPS
56.6
0.19
1.9
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028099
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019663
8020843 - 8021868
1026