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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8037694_8042153_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
8037694 - 8042153
Intron Length:
4460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
78.1
36.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.2
0.86
0.7
83.7
30.9
Minor 5ss
34.5
-1.8
3.3
50.2
46
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
NFATC2
Ensembl Gene ID:
ENSAPLG00000007259
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043069
8036747 - 8122226
85480