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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8066206_8067744_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8066206 - 8067744
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTACAAATAACG
Flanking Amino Acid:
SQPQHFTYHPVPSIKTEPID
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
75.1
33.1
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
76.5
0.6
0.9
69.1
41.8
Minor 5ss
34
-1.8
3.1
45.2
42.8
Minor BPS
45.7
-0.4
2.1
57.86
42.4

Associated Gene:

Gene:
NFATC2
Ensembl Gene ID:
ENSAPLG00000007259
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026532
8036747 - 8122226
85480
ENSAPLT00000007546
8042154 - 8130481
88328
ENSAPLT00000043069
8036747 - 8122226
85480