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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8067872_8068922_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8067872 - 8068922
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCATTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCACCTTTCATT
Flanking Amino Acid:
ATVDKDKSQPSMLFVEIPEY
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.6
0.73
0.9
80.3
37.1
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
53.9
0.2
1.7
69.65
41.9

Associated Gene:

Gene:
NFATC2
Ensembl Gene ID:
ENSAPLG00000007259
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043069
8036747 - 8122226
85480
ENSAPLT00000026532
8036747 - 8122226
85480
ENSAPLT00000007546
8042154 - 8130481
88328