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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8068979_8083175_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8068979 - 8083175
Intron Length:
14197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
AATATTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTTACATTAATA
Flanking Amino Acid:
SKVVFTEKTSDGQQIWEMEA
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
72.5
0.51
0.9
63.4
43.1
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
65.4
0.48
1.6
74.56
36.5

Associated Gene:

Gene:
NFATC2
Ensembl Gene ID:
ENSAPLG00000007259
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026532
8036747 - 8122226
85480
ENSAPLT00000007546
8042154 - 8130481
88328
ENSAPLT00000043069
8036747 - 8122226
85480