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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8152602_8153446_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8152602 - 8153446
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
ACCTTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGGTCTTTAACC
Flanking Amino Acid:
VPLYQGFLIIGYSTIYTMFP
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.6
36.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
77.7
0.62
0.8
71.7
32.1
Minor 5ss
27.2
-2.6
3.3
31.5
42.2
Minor BPS
78.9
0.89
1.1
78.94
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006598
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006909
8147722 - 8162220
14499