About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8155022_8155790_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8155022 - 8155790

Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGAGATTC

5'SS Class:
strong_major

3'SS Sequence:
CTATTGTACACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TAATAAA

U12 Branch Point Sequence:
CTCCCTATAATT

Flanking Amino Acid:
ADCGVGVEGKEGKQASLAAD

Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.5
0.91
0.8
81.1
26.4

Major BPS
70.8
0.52
1
70.6
31.6

Major PPT
70.3
0.46
1
64.8
40.3

Minor 5ss
37.1
-1.5
3.2
49.9
46.6

Minor BPS
54.5
0.22
1.6
69.75
41.8

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8147722 - 8162220
14499