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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8155856_8156691_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8155856 - 8156691
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGAC
5'SS Class:
major
3'SS Sequence:
CTGTGACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ATGTCATTCATC
Flanking Amino Acid:
ERTGKLTCAVGDGGNDVSMI
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.3
35.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70.7
0.47
1
62.8
38.7
Minor 5ss
29.6
-2.3
3.5
40.7
45.8
Minor BPS
51
0.01
2
65.72
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006598
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006909
8147722 - 8162220
14499