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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8157403_8159336_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8157403 - 8159336
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCTA
5'SS Class:
major
3'SS Sequence:
ACTTGGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGTGTTTAATA
Flanking Amino Acid:
LETLRNAGIKVWMLTGDKLE
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
62.7
43.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
67.5
0.4
1
63.2
42.4
Minor 5ss
43.9
-0.7
2.8
56.9
47.3
Minor BPS
65.4
0.48
1.7
74.46
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006598
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006909
8147722 - 8162220
14499