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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8160442_8161282_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8160442 - 8161282
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTATGGTTTACA
Flanking Amino Acid:
VQYNDWLEEECGNMAREGLR
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
85
0.79
0.8
76.9
36.9
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
46.4
-0.2
2.6
67.92
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006598
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006909
8147722 - 8162220
14499