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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8181563_8186086_R

Intron Information:

Intron Rank:
139919
Intron Class:
major
Intron Phase:
Intron Coordinates:
8181563 - 8186086
Intron Length:
4524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGAATCCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83
0.74
0.8
77.3
31.4
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
55
0.14
1.7
65.67
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022697
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045452
8180467 - 8186550
6084