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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_818903_819687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
818903 - 819687
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTCC
5'SS Class:
major
3'SS Sequence:
TTATGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTCTCTTTATGT
Flanking Amino Acid:
SPCIRTSPMQVLFSNIEDIL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
68.6
37.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81.1
0.7
0.9
78.2
39.7
Minor 5ss
45.2
-0.5
2.8
60.5
44
Minor BPS
60.1
0.4
1.9
79.06
43.7

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010521
815464 - 918244
102781