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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_819811_826684_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
819811 - 826684
Intron Length:
6874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AATAACTTAATA
Flanking Amino Acid:
HELGNVFLKFKDKFFVYEEY
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
89.9
0.9
0.6
84.8
22.8
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
63.2
0.41
1.5
69.3
36.3

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781