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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8219536_8221117_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8219536 - 8221117
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTCTCAAAAT
Flanking Amino Acid:
VEINREQWIQDAEECDKAGS
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.2
37.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.9
0.61
0.8
69.2
37
Minor 5ss
37.9
-1.4
3.6
56.2
48.2
Minor BPS
49.9
0.07
2
76.32
40.1

Associated Gene:

Gene:
PRPF6
Ensembl Gene ID:
ENSAPLG00000015219
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042541
8206368 - 8231831
25464
ENSAPLT00000015872
8210586 - 8231980
21395