Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8221321_8225209_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8221321 - 8225209

Intron Length:

3889

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAAAGCA

5'SS Class:

weak_major

3'SS Sequence:

TTTCTTGTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

TTTCCAGTGATT

Flanking Amino Acid:

LEPGKLGYFNQESLEALLQR

Intron Amino Acid Position:

538

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.4

0.18

52.2

32.3

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

85.1

0.79

0.8

84.1

30.8

Minor 5ss

26.8

-2.7

3.3

35.6

41.9

Minor BPS

0.01

2.3

77.83

38.6

Associated Gene:

Gene:

PRPF6

Ensembl Gene ID:

ENSAPLG00000015219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042541

8206368 - 8231831

25464

ENSAPLT00000015872

8210586 - 8231980

21395