Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8231155_8231695_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8231155 - 8231695

Intron Length:

541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

ATCTTGATCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GATTTTTTAATC

Flanking Amino Acid:

HDPHVLLAVAKLCCFSLLPS

Intron Amino Acid Position:

929

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

74.7

29.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

69.2

0.43

0.9

66.7

38.7

Minor 5ss

37.7

-1.4

2.8

45.3

36.6

Minor BPS

70.8

0.63

1.1

71.6

33.4

Associated Gene:

Gene:

PRPF6

Ensembl Gene ID:

ENSAPLG00000015219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042541

8206368 - 8231831

25464