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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8251719_8257213_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8251719 - 8257213
Intron Length:
5495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCATTCTGACCG
Flanking Amino Acid:
SKDTGNSKDQSSNKRQEPPK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.5
0.75
0.7
81.7
30.3
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
47
-0.3
1.8
49.32
44.2

Associated Gene:

Gene:
TCEA2
Ensembl Gene ID:
ENSAPLG00000010208
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027139
8247890 - 8262328
14439
ENSAPLT00000010668
8247890 - 8265547
17658