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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8262010_8262314_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8262010 - 8262314
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTGGAAA
Flanking Amino Acid:
PEQIAVMTSEEMASNELKEI
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.4
0.44
1.2
74.5
39.3
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
55.8
0.18
1.6
71.39
34.2

Associated Gene:

Gene:
TCEA2
Ensembl Gene ID:
ENSAPLG00000010208
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027139
8247890 - 8262328
14439
ENSAPLT00000010668
8247890 - 8265547
17658