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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_826790_830373_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
826790 - 830373
Intron Length:
3584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTTTTGATT
Flanking Amino Acid:
KIPTVRAFLLSCMLLGGRKT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.6
0.73
0.8
77.6
35.5
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
70.4
0.72
1.1
81.5
34.7

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781