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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_830476_848945_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
830476 - 848945
Intron Length:
18470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
RICKYPLLLKELAKRTPSKH
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.9
83.3
25.6
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781