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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8306972_8313723_F

Intron Information:

Intron Rank:
125908
Intron Class:
major
Intron Phase:
Intron Coordinates:
8306972 - 8313723
Intron Length:
6752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.8
0.87
0.7
90.1
24.5
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
64.3
0.43
1.7
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017830
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030753
8306843 - 8313764
6922