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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8312914_8313723_F

Intron Information:

Intron Rank:
125909
Intron Class:
major
Intron Phase:
Intron Coordinates:
8312914 - 8313723
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1
55
43.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.8
0.87
0.7
90.1
24.5
Minor 5ss
32.9
-2
3
36.9
41.3
Minor BPS
64.3
0.43
1.7
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017830
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044311
8312743 - 8315396
2654