Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8356140_8360242_F

Intron Information:

Intron Rank:

136980

Intron Class:

major

Intron Phase:

Intron Coordinates:

8356140 - 8360242

Intron Length:

4103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTGCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

CTTTTGTTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.8

87.9

29.3

Major BPS

71.4

0.53

1.2

63.4

Major PPT

71.9

0.49

0.9

68.2

32.1

Minor 5ss

49.8

-0

2.8

73.2

43.7

Minor BPS

53.3

0.18

2.3

78.66

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017686

8356036 - 8360891

4856