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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8360361_8360701_F

Intron Information:

Intron Rank:
136981
Intron Class:
major
Intron Phase:
Intron Coordinates:
8360361 - 8360701
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.5
32.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
87.8
0.85
0.7
82.7
25.9
Minor 5ss
29.4
-2.4
3.4
39.4
46.5
Minor BPS
64.6
0.45
1.6
70.65
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023762
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017686
8356036 - 8360891
4856