About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8374428_8374664_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8374428 - 8374664
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTGCTGATCT
Flanking Amino Acid:
VMGSAENENNEIDCLIKLPS
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
70.3
35.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
27.6
-2.6
2.9
28.7
37.3
Minor BPS
52.1
0.14
2.2
77.81
44.1

Associated Gene:

Gene:
OPRL1
Ensembl Gene ID:
ENSAPLG00000026067
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033128
8373977 - 8377412
3436