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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8413994_8414087_F

Intron Information:

Intron Rank:
136699
Intron Class:
major
Intron Phase:
Intron Coordinates:
8413994 - 8414087
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CGGTGCTGAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
89.5
0.89
0.6
85
22.6
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
44.4
-0.5
2
46.17
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023616
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041944
8411010 - 8416924
5915
ENSAPLT00000028499
8411960 - 8416924
4965