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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8415782_8416479_F

Intron Information:

Intron Rank:
136703
Intron Class:
major
Intron Phase:
Intron Coordinates:
8415782 - 8416479
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGGATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.3
0.84
0.8
84.9
35.2
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
54.4
0.22
1.6
67.86
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023616
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041944
8411010 - 8416924
5915
ENSAPLT00000028499
8411960 - 8416924
4965