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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_849108_854071_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
849108 - 854071
Intron Length:
4964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGAAAAATAAAC
Flanking Amino Acid:
QLQSHIEGWEGSNLTDICTQ
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
62.5
42.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
38.4
-1.3
3
51.2
45.4
Minor BPS
40.5
-0.7
2
50.42
38.3

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781