Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8550222_8553213_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8550222 - 8553213

Intron Length:

2992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

CTGTTCTTGATG

Flanking Amino Acid:

VPTELIGQEVSCPTPGCNGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

79.6

33.9

Major BPS

83.8

0.84

73.6

41.8

Major PPT

88.4

0.86

0.7

81.1

30.9

Minor 5ss

33.5

-1.9

3.1

43.7

Minor BPS

62.2

0.24

1.4

61.06

41.9

Associated Gene:

Gene:

MYT1

Ensembl Gene ID:

ENSAPLG00000007386

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029406

8536899 - 8578776

41878

ENSAPLT00000007705

8536899 - 8578776

41878