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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8553277_8554026_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8553277 - 8554026
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCACCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGCTCCCACCC
Flanking Amino Acid:
HIRGKYARHRSLQSCPLAKK
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
68.7
0.42
0.8
61.9
27.5
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
42.9
-0.5
2
56.4
41.9

Associated Gene:

Gene:
MYT1
Ensembl Gene ID:
ENSAPLG00000007386
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029406
8536899 - 8578776
41878
ENSAPLT00000007705
8536899 - 8578776
41878