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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8558205_8559728_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8558205 - 8559728
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
TCACCTCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCTCACAC
Flanking Amino Acid:
HVNSNRNTHRSLSGCPIAAA
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.1
0.39
0.9
61.2
33.9
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
47.3
-0.2
2
60.73
44.1

Associated Gene:

Gene:
MYT1
Ensembl Gene ID:
ENSAPLG00000007386
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029406
8536899 - 8578776
41878
ENSAPLT00000007705
8536899 - 8578776
41878