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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8566958_8567171_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8566958 - 8567171
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATCC
Flanking Amino Acid:
HITGNYASHRSLSGCPLADK
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
39.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
33.7
-1.9
3
40.8
45.6
Minor BPS
66.6
0.5
2
82.19
38.3

Associated Gene:

Gene:
MYT1
Ensembl Gene ID:
ENSAPLG00000007386
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007705
8536899 - 8578776
41878