Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8596727_8598511_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8596727 - 8598511

Intron Length:

1785

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TCTTAATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

ATTTTCTTAATT

Flanking Amino Acid:

FFIKTSDSFDKFEFCEPSFV

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

78.3

36.2

Major BPS

0.92

0.9

86.2

29.1

Major PPT

84.4

0.77

0.8

81.4

34.9

Minor 5ss

38.8

-1.3

3.1

40.3

Minor BPS

85.7

1.2

0.9

93.91

26.5

Associated Gene:

Gene:

PCMTD2

Ensembl Gene ID:

ENSAPLG00000007753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046634

8592526 - 8601682

9157

ENSAPLT00000008047

8591724 - 8601738

10015