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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_862646_866690_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
862646 - 866690
Intron Length:
4045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGACAA
U12 Branch Point Sequence:
AAAAAGACAATT
Flanking Amino Acid:
LSTVPKCFLGNEFVSWLTEI
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
46.8
-0.2
1
50.7
34.3
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
34.5
-1.1
2.2
48.13
37.5

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781