Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8635171_8635575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8635171 - 8635575

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTAATTGAG

5'SS Class:

major

3'SS Sequence:

CCTTTCCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GGTTTCTGAAGC

Flanking Amino Acid:

EVVLRYFGTPSKPTFVIQPQ

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.31

1.2

58.1

Major BPS

82.1

0.8

71.6

36.4

Major PPT

85.2

0.79

0.7

76.8

31.9

Minor 5ss

34.1

-1.8

3.2

45.3

Minor BPS

54.2

0.11

1.8

64.57

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022472

8608312 - 8650116

41805

ENSAPLT00000008253

8608312 - 8648304

39993