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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8636139_8637429_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8636139 - 8637429
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
CTCGTTCCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AGCCAATTAACA
Flanking Amino Acid:
PPPVIAWTRAGGPLPNDRRH
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
70.2
0.45
1
69.3
37
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
48.9
-0
1.8
58.85
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007917
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022472
8608312 - 8650116
41805