Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8646110_8646743_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8646110 - 8646743

Intron Length:

634

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGTCA

5'SS Class:

major

3'SS Sequence:

CCGCCCACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

TACTCCTGACTC

Flanking Amino Acid:

TQFSRLRHGDRFWYENPGVF

Intron Amino Acid Position:

1197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

62.8

38.2

Major BPS

68.9

0.47

59.2

39.1

Major PPT

66.3

0.37

0.9

58.4

31.5

Minor 5ss

35.3

-1.7

3.5

47.9

47.7

Minor BPS

54.3

0.11

1.8

64.22

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022472

8608312 - 8650116

41805

ENSAPLT00000008253

8608312 - 8648304

39993