Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8648046_8648186_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8648046 - 8648186

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACAT

5'SS Class:

strong_major

3'SS Sequence:

ATATCCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

ATATCCCCACCA

Flanking Amino Acid:

EKTVASLRKQVNVLESQLRW

Intron Amino Acid Position:

1337

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

36.4

Major BPS

79.2

0.73

75.3

39.4

Major PPT

65.6

0.35

57.1

Minor 5ss

-1.9

3.3

47.4

Minor BPS

47.2

-0.2

2.1

64.14

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022472

8608312 - 8650116

41805

ENSAPLT00000008253

8608312 - 8648304

39993