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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8648305_8649550_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
8648305 - 8649550
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.5
0.8
0.8
82.8
32.4
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
64.6
0.54
1.5
79.05
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007917
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022472
8608312 - 8650116
41805